← Back to CoursesMolecular Neuroscience: PhD Level

Neuroanatomy Explorer

Drag to rotate · scroll to zoom · click regions to explore

View
Loading 3D model…

Click a region
to explore it

Memory Deck

Flip each card and rate whether you knew it. Your score is saved.

Term
Definition

Deck complete — score saved.

Match the Pairs

Match each term to its definition. Finish the board to earn your score.

All matched — score saved.

Concept Constellation

Every key idea in this course, mapped as an explorable 3D constellation. Drag to rotate, scroll to zoom, click a node.

Click a node to read its definition.

Synaptic Molecular Architecture and Plasticity

Manual: General · Subject: Molecular Neuroscience

Focuses on receptor trafficking, scaffolds, signaling complexes, and the molecular logic of learning-related synaptic change.

Synapses as Molecular Machines

Core Mechanisms

Synaptic transmission depends on presynaptic vesicle cycling, postsynaptic receptor composition, scaffold proteins, adhesion molecules, and second-messenger cascades. Plasticity arises when these components are reorganized by activity, neuromodulators, and experience.

Key Molecules

AMPA receptor
Major mediator of fast excitatory transmission and plasticity expression
NMDA receptor
Voltage- and ligand-gated coincidence detector
PSD-95
Postsynaptic scaffold organizing receptor complexes
CaMKII
A calcium-sensitive kinase implicated in potentiation
SNARE proteins
Core machinery for synaptic vesicle fusion

Why are NMDA receptors considered coincidence detectors?

Name one molecular process that can increase synaptic strength during plasticity.

Pre- vs Postsynaptic Plasticity

Presynaptic

  • Changes release probability
  • Involves vesicle pools and calcium channels

Postsynaptic

  • Changes receptor number or composition
  • Involves scaffolds and spine morphology
ℹ️

Beyond Hebbian Rules

Plasticity is not limited to potentiation and depression; synapses also undergo metaplasticity, homeostatic scaling, structural remodeling, and local translation-dependent remodeling.

Open Problem

One unresolved issue is how synapse-specific molecular changes are stored and maintained amid continuous protein turnover. Another is how local translational control produces input-specific memory traces without destabilizing circuit function.

Mechanistic Dissection Strategy

  1. 1

    Step 1: Identify plasticity-inducing stimulus.

  2. 2

    Step 2: Measure candidate molecular changes at synapses.

  3. 3

    Step 3: Perturb receptors, kinases, or scaffolds.

  4. 4

    Step 4: Test effects on physiology and behavior.

Which protein is most directly associated with vesicle fusion machinery?